PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14644.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SRS
Protein Properties Length: 566aa    MW: 60854.8 Da    PI: 8.3757
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14644.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702202.11.6e-621072745154
                   DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.kskkqsalss 88 
                              + +CqdCGnqakkdC+h+RCRtCCksrgfdCathvks Wvpa +rrerq ++aaa s+a++s+ +++++k++r   + +++ + ++
  mrna14644.1-v1.0-hybrid 107 ALTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSSWVPAVRRRERQLMAAAAGSSASTSHtTSSNAKKPRLVtSRNTTPSHTN 192
                              679*********************************************99988877666555537788888887733444556677 PP

                   DUF702  89 tklssaeskkeletss...............lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                              + +s+++++++ +ts+               +P +v+++avf+cvrv++vdd ge+e+aY+++v+i+GhvfkG+LydqG ++
  mrna14644.1-v1.0-hybrid 193 SATSNTTPPRSYDTSHttskhqhhdggfpdtMPGQVQAPAVFKCVRVTAVDDgGEDEYAYHAVVKINGHVFKGFLYDQGRDH 274
                              78899999999999989999********************************899************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.0E-58108273IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.8E-25109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.1E-27224271IPR006511Lateral Root Primordium type 1, C-terminal
PfamPF048277.3E-11338375IPR006912Harbinger transposase-derived protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGMLGLRDVF LVAPAAASYH HHHQDLLSSH HNSLNASNPA TALGVGVMND DSDDHNMMSG  60
RNRNCGGGGV QLWQQPTQQQ QHQLFLKKNQ NLHLMVQAGG GASAASALTC QDCGNQAKKD  120
CSHRRCRTCC KSRGFDCATH VKSSWVPAVR RRERQLMAAA AGSSASTSHT TSSNAKKPRL  180
VTSRNTTPSH TNSATSNTTP PRSYDTSHTT SKHQHHDGGF PDTMPGQVQA PAVFKCVRVT  240
AVDDGGEDEY AYHAVVKING HVFKGFLYDQ GRDHHGFPNI SHLHLGGGSG GGGGGATSST  300
PTGRNEGAPI LDPSDAYAAA AAASTSGGLL LGGSTFFARI AIVRGPARGW NMEDLQYIMT  360
TCIILHNMIV DDEHDEIEDN HEVDPDEVLT RPRRAKIYDH YKVYHLVERD PPALEEFMRQ  420
YQQVRTSLLS PPYVTGEGAP PLQQTLAASP TTFHPQRIRR IPVFREAAGV RWGGGAPSPA  480
PYDGEQREIR TLRRCGRPAD VSPLSTVRLR RRGVSTPVAS SSVPDHFSSP ASPPNSSFPA  540
RSILFEVLGD LAGKLEFGGL AGEGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293145.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK92e-75LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA5BRG11e-90A5BRG1_VITVI; Putative uncharacterized protein (Fragment)
TrEMBLF6HA247e-91F6HA24_VITVI; Putative uncharacterized protein
STRINGVIT_06s0009g03450.t012e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-60Lateral root primordium (LRP) protein-related